Lydia Freddolino
Biochemistry, Genetics and Molecular Biology · University of Michigan
Publications
58
Citations
501
Est. group size
~15
Recurring co-author estimate
Active years
16
Publishing since 2011
Typically publishes in teams of ~5 · 34% small-team papers (≤3 authors) · across 20 venues
- ShapeME: A Tool and Web Front-end for De Novo Discovery of Structural Motifs Underpinning Protein-DNA Interactions
Journal of Molecular Biology · 2026
- Hfq-polyP mass spec and code
Zenodo (CERN European Organization for Nuclear Research) · 2026
- Polyphosphate modulates the stress-responsive formation of functional RNA-protein condensates in bacteria and mammalian cells
PLoS Biology · 2026
- Profiling large-scale protein occupancy on bacterial genomes using IPOD-HR
Nature Protocols · 2026
- <i>Escherichia coli</i> and <i>Salmonella</i> : their past, present, and future in scientific research and publications
Microbiology and Molecular Biology Reviews · 2026
- Whole-proteome structure/function prediction in Uropathogenic <i>E. coli</i> reveals previously missed host-microbe and microbe-phage interaction pathways
bioRxiv (Cold Spring Harbor Laboratory) · 2026
- Author Correction: Molecular mechanism of ligand recognition by NR3 subtype glutamate receptors
The EMBO Journal · 2026
- A graphic and command line protocol for quick and accurate comparisons of protein and nucleic acid structures with US-align
Nature Protocols · 2025
- Polyphosphate: The “Dark Matter” of Bacterial Chromatin Structure
Molecular Microbiology · 2025
- Viperin expression leads to downregulation of mitochondrial genes through misincorporation of ddhCTP by mitochondrial RNA polymerase
Journal of Biological Chemistry · 2025
- DNA methylation affects gene expression but not global chromatin structure in <i>Escherichia coli</i>
Journal of Bacteriology · 2025
- Multiscale regulation of nutrient stress responses in <i>Escherichia coli</i> from chromatin structure to small regulatory RNAs
Nucleic Acids Research · 2025
- Highlights of Model Quality Assessment in <scp>CASP16</scp>
Proteins Structure Function and Bioinformatics · 2025
- HP-Bodies – Ancestral Condensates that Regulate RNA Turnover and Protein Translation in Bacteria
bioRxiv (Cold Spring Harbor Laboratory) · 2025
- LsrL modulates Lsr2-induced chromatin structure to tune biosynthetic gene cluster regulation in <i>Streptomyces venezuelae</i>
bioRxiv (Cold Spring Harbor Laboratory) · 2025
- bioRxiv (Cold Spring Harbor Laboratory)×21
- Methods in molecular biology×3
- Briefings in Bioinformatics×2
- Nature Protocols×2
- Nucleic Acids Research×2
- Jim Clauwaert
Biochemistry, Genetics and Molecular Biology · University of Michigan
- Crystal E. Love
Biochemistry, Genetics and Molecular Biology · Indiana University
- Kathleen Sandman
Biochemistry, Genetics and Molecular Biology · The Ohio State University
- Victor Y. Zhao
Biochemistry, Genetics and Molecular Biology · University of Michigan
- Aaron T. Frank
Biochemistry, Genetics and Molecular Biology · University of Michigan
This profile was generated automatically from public scholarly data (OpenAlex). Group size and activity levels are estimates derived from co-authorship patterns.
Last updated Jul 25, 2026.
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