Alexandr A. Kalinin

Biochemistry, Genetics and Molecular Biology · University of Michigan

Mid career · publishing since 2015Rising activity

Cell Image Analysis Techniques Image Processing Techniques and Applications AI in cancer detection Single-cell and spatial transcriptomics Radiomics and Machine Learning in Medical Imaging

Publications

Citations

4,245

Est. group size

Recurring co-author estimate

Active years

Publishing since 2015

In context

Among 1,692 mid career Biochemistry, Genetics and Molecular Biology PIs within our index

Citations: 4,245cohort median 809

Publications / year (recent): 4.4cohort median 3.2

Typically publishes in teams of ~6 · 22% small-team papers (≤3 authors) · across 14 venues

Publication cadence

Publications per year over the last 10 years — averaging 4.4/year recently

Collaborators per year

Distinct co-authors at University of Michigan each year — a rough indication of whether the group around this researcher has been growing or contracting. An estimate from co-authorship, not a roster: collaborators are not necessarily lab members, and recent years can be under-counted while indexing catches up.

Recent publications

Reproducible image-based profiling with Pycytominer
Zenodo (CERN European Organization for Nuclear Research) · 2026
Reproducible image-based profiling with Pycytominer
Zenodo (CERN European Organization for Nuclear Research) · 2026
Reproducible image-based profiling with Pycytominer
Nature Methods · 2025
Morphological map of under- and overexpression of genes in human cells
Nature Methods · 2025
Progress and new challenges in image-based profiling.
PubMed · 2025
cp_measure: API-first feature extraction for image-based profiling workflows.
PubMed · 2025
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations
Nature Methods · 2024
Improving Acne Image Grading with Label Distribution Smoothing
2024
Morphological map of under- and over-expression of genes in human cells
bioRxiv (Cold Spring Harbor Laboratory) · 2024
Improving Acne Image Grading with Label Distribution Smoothing
arXiv (Cornell University) · 2024
Integrating inflammatory biomarker analysis and artificial-intelligence-enabled image-based profiling to identify drug targets for intestinal fibrosis
Cell chemical biology · 2023
Reproducible image-based profiling with Pycytominer
PubMed · 2023
SOCRAT: A Dynamic Web Toolbox for Interactive Data Processing, Analysis and Visualization
Information · 2022
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations
bioRxiv (Cold Spring Harbor Laboratory) · 2022
Ten quick tips for deep learning in biology
PLoS Computational Biology · 2022

Publishes in

bioRxiv (Cold Spring Harbor Laboratory)×14
PubMed×5
Scientific Reports×3
Nature Methods×3
Zenodo (CERN European Organization for Nuclear Research)×3

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This profile was generated automatically from public scholarly data (OpenAlex). Group size and activity levels are estimates derived from co-authorship patterns.

Last updated Jul 25, 2026.

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