Ahmed Mohamed
Biochemistry, Genetics and Molecular Biology · Purdue University West Lafayette
Publications
60
Citations
796
Est. group size
—
Recurring co-author estimate
Active years
26
Publishing since 2001
This researcher works in biochemistry, genetics, and molecular biology, with a focus on developing computational and experimental tools to study proteins, RNA, and cells at high resolution. Their work spans proteomics (studying proteins), spatial and single-cell transcriptomics (mapping gene activity within tissue and individual cells), and multi-omics data integration, often applied to cancer, kidney injury, and immune cell biology. They also contribute software tools (such as R packages) that help other scientists analyze complex biological datasets.
Publication output has grown over the last decade, rising from occasional papers in 2017-2019 to a steady output of roughly 7-10 papers per year from 2020 onward.
Generated by claude-sonnet-5 from public bibliographic data · Jul 20, 2026
- Quantitative Proteomic Analysis Unveils Protein Concentration Effects in Neat Urine Compared to Urine Extracellular Vesicles
Journal of Proteome Research · 2025
- Abstract 4361778: Comparative efficacy of percutaneous coronary intervention guidance strategies: A network meta-analysis of 80 randomized clinical trials with reconstructed time-to-event analysis
Circulation · 2025
- mastR: an R package for automated identification of tissue-specific gene signatures in multi-group differential expression analysis
Bioinformatics · 2025
- A Comprehensive Survey on Basic Safety Message Attacks and Their Detection
Lecture notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering · 2025
- Human proximal tubular epithelial cell-derived small extracellular vesicles mediate synchronized tubular ferroptosis in hypoxic kidney injury
Redox Biology · 2024
- Integrative temporal multi-omics reveals uncoupling of transcriptome and proteome during human T cell activation
npj Systems Biology and Applications · 2024
- vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis
BMC Bioinformatics · 2024
- Defining the relationship between cellular and extracellular vesicle (EV) content in breast cancer via an integrative multi‐omic analysis
PROTEOMICS · 2024
- hoodscanR: profiling single-cell neighborhoods in spatial transcriptomics data
bioRxiv (Cold Spring Harbor Laboratory) · 2024
- mastR: Marker Automated Screening Tool for multi-omics data
bioRxiv (Cold Spring Harbor Laboratory) · 2024
- Data-Driven Subsampling in the Presence of an Adversarial Actor
arXiv (Cornell University) · 2024
- Data-Driven Subsampling in the Presence of an Adversarial Actor
2024
- standR: spatial transcriptomic analysis for GeoMx DSP data
Nucleic Acids Research · 2023
- Discovery and validation of serum glycoprotein biomarkers for high grade serous ovarian cancer
PROTEOMICS - CLINICAL APPLICATIONS · 2023
- vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis
Nucleic Acids Research · 2023
- bioRxiv (Cold Spring Harbor Laboratory)×7
- arXiv (Cornell University)×6
- Nucleic Acids Research×4
- Journal of Proteome Research×3
- PROTEOMICS - CLINICAL APPLICATIONS×2
- Elmar Bucher
Biochemistry, Genetics and Molecular Biology · Indiana University
- Brian D. Fries
Biochemistry, Genetics and Molecular Biology · The Ohio State University
- Kyle Spencer
Biochemistry, Genetics and Molecular Biology · The Ohio State University
- Fernando Tobias
Biochemistry, Genetics and Molecular Biology · The Ohio State University
- Jalal Siddiqui
Biochemistry, Genetics and Molecular Biology · The Ohio State University
This profile was generated automatically from public scholarly data (OpenAlex). Group size and activity levels are estimates derived from co-authorship patterns.
Last updated Jul 20, 2026.
Claim or correct this profile