Kaiyuan Zhu
Biochemistry, Genetics and Molecular Biology · Indiana University
Publications
46
Citations
299
Est. group size
—
Recurring co-author estimate
Active years
12
Publishing since 2015
Kaiyuan Zhu develops computational methods and algorithms to analyze cancer genomes, with a focus on complex structural changes such as extrachromosomal DNA (circular DNA that can carry cancer-promoting genes) and the three-dimensional organization of the genome. The work also spans tools for efficiently representing genetic variation and privacy-preserving approaches to genome analysis, alongside contributions to plant genomics.
Publication activity has been steady throughout the decade, with a modest uptick in the most recent years (2024-2025).
Generated by claude-opus-4-8 from public bibliographic data · Jul 11, 2026
- Additional file 1 of LCPan: efficient variation graph construction using locally consistent parsing
Figshare · 2026
- Additional file 1 of LCPan: efficient variation graph construction using locally consistent parsing
Figshare · 2026
- TX-Phase: Secure Phasing of Private Genomes in a Trusted Execution Environment
Lecture notes in computer science · 2025
- A gapless genome of early-diverging Asteraceae species, <i>Gerbera</i> , provides insights for ray floret differentiation in the capitula
Horticulture Research · 2025
- Abstract 5046: Three-dimensional genome landscape of primary human cancers
Cancer Research · 2025
- Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D
bioRxiv (Cold Spring Harbor Laboratory) · 2025
- Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity
Nature Communications · 2025
- Three-dimensional genome landscape of primary human cancers
Nature Genetics · 2025
- Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D
Nature Communications · 2025
- Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-Microbes
Science Advances · 2024
- Complete chloroplast genome sequence and characteristic analysis of Paeonia suffruticosa from the lower reaches of the Yangtze River basin
Notulae Botanicae Horti Agrobotanici Cluj-Napoca · 2024
- Learning-Augmented Sketching Offers Improved Performance for Privacy Preserving and Secure GWAS
bioRxiv (Cold Spring Harbor Laboratory) · 2024
- CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing
Genome Research · 2024
- CoRAL Accurately Resolves Extrachromosomal DNA Genome Structures with Long-Read Sequencing
Lecture notes in computer science · 2024
- Cold atmospheric plasma restores skewed macrophage polarization in triple negative breast cancers via enhancing KAT6A acetylation
Free Radical Biology and Medicine · 2024
- bioRxiv (Cold Spring Harbor Laboratory)×9
- Nature Communications×5
- Notulae Botanicae Horti Agrobotanici Cluj-Napoca×3
- Encyclopedia of Big Data Technologies×2
- Cancer Research×2
This profile was generated automatically from public scholarly data (OpenAlex). Group size and activity levels are estimates derived from co-authorship patterns.
Last updated Jul 11, 2026.
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