Jingzhi Pu
Biochemistry, Genetics and Molecular Biology · Indiana University
Publications
84
Citations
12,369
Est. group size
—
Recurring co-author estimate
Active years
26
Publishing since 2001
Jingzhi Pu develops computational methods to simulate how molecules and chemical reactions behave, especially in biological systems like enzymes. A central focus is combining quantum mechanics with classical models (QM/MM) and using machine learning to make these expensive simulations faster and more accurate. Applications include studying reaction energies, DNA damage, and behavior of molecules in solution.
Publication activity has been steady with growth, peaking around 2021-2023 and holding at roughly five papers per year in recent years.
Generated by claude-opus-4-8 from public bibliographic data · Jul 11, 2026
- Enhancing Gaussian process regression-accelerated QM/MM free energy simulations using atomic environment descriptors
The Journal of Chemical Physics · 2026
- Thermodynamic work and heat for a quantum process: Approach by Hamiltonian decomposition
arXiv (Cornell University) · 2025
- Pressure-enhanced f-electron orbital weighting in UTe2 mapped by quantum interferometry
Communications Physics · 2025
- Enhancing Gaussian process regression-accelerated QM/MM free energy simulations using atomic environment descriptors
ChemRxiv · 2025
- Enhancing Gaussian process regression-accelerated QM/MM free energy simulations using atomic environment descriptors
ChemRxiv · 2025
- CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed
The Journal of Physical Chemistry B · 2024
- Pressure-enhanced $f$-electron orbital weighting in UTe2 mapped by quantum interferometry
arXiv (Cornell University) · 2024
- DFT/MM Simulations for Cycloreversion Reaction of Cyclobutane Pyrimidine Dimer with Deprotonated and Protonated E283
The Journal of Physical Chemistry B · 2024
- Machine learning based implicit solvent model for aqueous-solution alanine dipeptide molecular dynamics simulations
RSC Advances · 2023
- Bridging semiempirical and <i>ab initio</i> QM/MM potentials by Gaussian process regression and its sparse variants for free energy simulation
The Journal of Chemical Physics · 2023
- Polyrate 2023: A computer program for the calculation of chemical reaction rates for polyatomics. New version announcement
Computer Physics Communications · 2023
- Free Energy Profile Decomposition Analysis for QM/MM Simulations of Enzymatic Reactions
Journal of Chemical Theory and Computation · 2023
- Training machine learning potentials for reactive systems: A Colab tutorial on basic models
Journal of Computational Chemistry · 2023
- The Training of Machine Learning Potentials for Reactive Systems: A Colab Tutorial on Basic Models
ChemRxiv · 2023
- Revealing intrinsic changes of DNA induced by spore photoproduct lesion through computer simulation
Biophysical Chemistry · 2023
- ChemRxiv×10
- Journal of Chemical Theory and Computation×4
- The Journal of Physical Chemistry B×3
- Physical Chemistry Chemical Physics×2
- RSC Advances×2
This profile was generated automatically from public scholarly data (OpenAlex). Group size and activity levels are estimates derived from co-authorship patterns.
Last updated Jul 11, 2026.
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