Heber L. Rocha
Mathematics · Indiana University
Publications
34
Citations
382
Est. group size
~2
Recurring co-author estimate
Active years
11
Publishing since 2016
- Tumor-immune trajectory context connects static tissue architecture to clinical outcomes
bioRxiv (Cold Spring Harbor Laboratory) · 2026
- UQ-PhysiCell: An extensible Python framework for uncertainty quantification and model analysis in PhysiCell
bioRxiv (Cold Spring Harbor Laboratory) · 2026
- heberlr/UQ_PhysiCell: Version 1.2.5
Zenodo (CERN European Organization for Nuclear Research) · 2026
- Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories
Cell · 2025
- Drug-loaded nanoparticles for cancer therapy: A high-throughput multicellular agent-based modeling study
Journal of Theoretical Biology · 2025
- BIWT: a bioinformatics walkthrough for embedding spatial multiomics in agent-based models for virtual cells
Bioinformatics · 2025
- PhysiGym: bridging the gap between the Gymnasium reinforcement learning application interface and the PhysiCell agent-based model software
bioRxiv (Cold Spring Harbor Laboratory) · 2025
- Translating and evaluating single-cell Boolean network interventions in the multiscale setting
arXiv (Cornell University) · 2025
- Connecting Different Approaches for Cell Cycle Modeling: Learning Ordinary Differential Equations from Individual-Based Models
IEEE Transactions on Computational Biology and Bioinformatics · 2025
- A multiscale model of immune surveillance in micrometastases gives insights on cancer patient digital twins
npj Systems Biology and Applications · 2024
- PhysiCell Studio: a graphical tool to make agent-based modeling more accessible
Gigabyte · 2024
- Drug-loaded nanoparticles for cancer therapy: a high-throughput multicellular agent-based modeling study
bioRxiv (Cold Spring Harbor Laboratory) · 2024
- Connecting Different Approaches for Cell Cycle Modeling: Learning Ordinary Differential Equations from Individual-Based Models
SSRN Electronic Journal · 2024
- Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
bioRxiv (Cold Spring Harbor Laboratory) · 2023
- PhysiCell Studio: a graphical tool to make agent-based modeling more accessible
bioRxiv (Cold Spring Harbor Laboratory) · 2023
- bioRxiv (Cold Spring Harbor Laboratory)×8
- Proceeding Series of the Brazilian Society of Computational and Applied Mathematics×4
- Computer Methods in Applied Mechanics and Engineering×2
- SSRN Electronic Journal×2
- LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)×2
This profile was generated automatically from public scholarly data (OpenAlex). Group size and activity levels are estimates derived from co-authorship patterns.
Last updated Jul 9, 2026.
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