Funda Ergün
Computer Science · Indiana University
Publications
53
Citations
1,218
Est. group size
—
Recurring co-author estimate
Active years
31
Publishing since 1995
Funda Ergün works in theoretical computer science, focusing on algorithms and data analysis. Recent work spans two directions: designing fast algorithms for analyzing streaming data (finding patterns like repetition even when some data is missing or mismatched), and applying computational methods to biology, such as reconstructing how tumors evolve from single-cell sequencing data.
Publication activity has been low and intermittent over the last decade, averaging under one paper per year, with a small resurgence in 2025.
Generated by claude-opus-4-8 from public bibliographic data · Jul 11, 2026
- Shared memory consensus on a ring: Epigenetic Consensus
2025
- A Partition Function Algorithm to Evaluate Inferred Subclonal Structures in Single-Cell Sequencing Data
Lecture notes in computer science · 2025
- Fast intratumor heterogeneity inference from single-cell sequencing data
Nature Computational Science · 2022
- Abstract LB019: Trisicell: Scalable Tumor Phylogeny Reconstruction and Validation Reveals Developmental Origin and Therapeutic Impact of Intratumoral Heterogeneity
Cancer Research · 2021
- PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem
Bioinformatics · 2020
- PhISCS-BnB: A Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem
bioRxiv (Cold Spring Harbor Laboratory) · 2020
- Periodicity in Data Streams with Wildcards
Theory of Computing Systems · 2019
- Periodicity in Data Streams with Wildcards
Lecture notes in computer science · 2018
- Periodicity in Data Streams with Wildcards
arXiv (Cornell University) · 2018
- Streaming Periodicity with Mismatches
arXiv (Cornell University) · 2017
- Lecture notes in computer science×2
- arXiv (Cornell University)×2
- Bioinformatics×1
- Nature Computational Science×1
- Theory of Computing Systems×1
This profile was generated automatically from public scholarly data (OpenAlex). Group size and activity levels are estimates derived from co-authorship patterns.
Last updated Jul 11, 2026.
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